bsxplorer.Genome

class Genome[source]

Methods

all

Filter annotation and calculate positions of flanking regions.

cds

Filter annotation by type == CDS and length threshold.

exon

Filter annotation by type == exon and length threshold.

from_custom

Create Genome from custom tab separated file with genomic regions.

from_gff

Constructor for Genome class from .gff file.

gene_body

Filter annotation by type == gene and calculate positions of flanking regions.

near_TES

Filter annotation by type == gene and calculate positions of near TES regions.

near_TSS

Filter annotation by type == gene and calculate positions of near TSS regions.

other

Filter annotation by selected type and calculate positions of nflanking regions.

raw

This method returns raw Genome DataFrame without any filtering and ranges manipulation.

validate