bsxplorer.ChrLevels.from_binom

classmethod ChrLevels.from_binom(file: str | Path, chr_min_length=1000000, window_length: int = 1000000, confidence: float | None = None, p_value: float = 0.05)

Initialize ChrLevels with .parquet file from Binom.

Parameters:

• file – Path to the report file.

• chr_min_length – Minimum length of chromosome to be analyzed

• window_length – Length of windows in bp

• confidence – Pvalue for confidence bands of the LinePlot.

• p_value – Pvalue with which cytosine will be considered methylated.