bsxplorer.EnrichmentResult.plot_density_mpl

EnrichmentResult.plot_density_mpl(fig_axes: tuple | None = None, flank_windows: int | None = None, body_windows: int | None = None, smooth: int | None = None, norm: bool = False, tick_labels: list[str] | None = None, label: str | None = None, **mpl_kwargs)[source]

Plot coverage, returned by RegAlignResult.metagene_coverage()

Parameters:

  • fig_axes – Tuple of ( matplotlib.pyplot.Figure, matplotlib.axes.Axes). New are created if None

  • flank_windows – Number of windows for flanking regions (set None for no resampling).

  • body_windows – Number of windows for body region (set None for no resampling).

  • smooth – Number of windows for SavGol filter (set 0 for no smoothing). Applied only if flank_windows and body_windows params are specified.

  • norm – Should the output plot be normalized by maximum coverage.

  • tick_labels – Labels for upstream, body region start and end, downstream (e.g. TSS, TES). Exactly 5 need to be provided. Set None to disable.

  • label – Label of line on line-plot

  • mpl_kwargs – Keyword arguments for matplotlib.plot

Return type:

matplotlib.pyplot.Figure