bsxplorer.Metagene.cluster

Metagene.cluster(count_threshold: int = 5, na_rm: float | None = None) → ClusterSingle

Cluster regions with hierarchical clustering, by their methylation pattern.

Parameters:

• na_rm – Replace empty windows by specified value.

• count_threshold – Minimum counts per window

Return type:

ClusterSingle

See also

ClusterSingle

For possible analysis options