bsxplorer.MetageneFiles.cluster

MetageneFiles.cluster(count_threshold=5, na_rm: float | None = None)[source]

Cluster samples regions by methylation pattern.

Parameters:

  • count_threshold – Minimum number of reads per fragment to include it in analysis.

  • na_rm – Value to fill empty fragments. (None if not full regions need to be deleted)

Return type:

ClusterMany