bsxplorer.UniversalBatch

class UniversalBatch(data: DataFrame, raw: Table | RecordBatch | None)[source]

Class for storing and converting methylation report data.

Methods

`__init__`
`colnames`
`filter_data`	Filter data by expression or keyword arguments
`filter_not_none`	Filter cytosines which have 0 reads.
`get_validated`
`pa_schema`
`pl_schema`	returns: Dictionary with column names and data types for polars.
`to_arrow`
`to_bedGraph`	returns: DataFrame with methylation data as bedGraph.
`to_bismark`	returns: DataFrame with methylation data as Bismark methylation report.
`to_cgmap`	returns: DataFrame with methylation data as CGmap.
`to_coverage`	returns: DataFrame with methylation data as coverage.

classmethod pl_schema() → OrderedDict[source]

to_bismark()[source]

to_coverage()[source]

to_bedGraph()[source]

filter_data(**kwargs)[source]

Filter data by expression or keyword arguments