bsxplorer.PivotRegion.PDR

PivotRegion.PDR(min_cyt: int = 5, min_depth: int = 4)[source]

Wrapper for _jit_epipolymorphism – JIT compiled PDR calculating function

Parameters:

  • min_cyt – Mimimal number of cytosines in region.

  • min_depth – Minimal depth of reads to consider this window for calculation

Return type:

Array with cytosine positions, Array of PDR values, Matrix with concordant/discordant reads.