bsxplorer.PivotRegion.epipolymorphism

PivotRegion.epipolymorphism(window_length: int = 4, min_depth: int = 4)[source]

Wrapper for _jit_epipolymorphism – JIT compiled EPM calculating function

Parameters:

window_length – Length of the sliding window
min_depth – Minimal depth of reads to consider this window for calculation

Return type:

Matrix with position of cytosines from window and array with their ME values