bsxplorer.PivotRegion.methylation_entropy

PivotRegion.methylation_entropy(window_length: int = 4, min_depth: int = 4)

Wrapper for _jit_methylation_entropy – JIT compiled ME calculating function

Parameters:

• window_length – Length of the sliding window

• min_depth – Minimal depth of reads to consider this window for calculation

Return type:

Matrix with position of cytosines from window and array with their ME values